PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01084A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 362aa    MW: 39388.1 Da    PI: 5.2796
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01084AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-181461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rgrWT+eEde+l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Oropetium_20150105_01084A 14 RGRWTAEEDEILASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                               8*******************************99************97 PP

2Myb_DNA-binding54.33.1e-1767112148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+ ++eE+++++++++ lG++ W++Ia++++ gRt++++k++w+++l
  Oropetium_20150105_01084A  67 RGNISKEEEDIIIKLHATLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                                7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.354961IPR017930Myb domain
SuperFamilySSF466892.7E-2911108IPR009057Homeodomain-like
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002492.5E-161461IPR001005SANT/Myb domain
CDDcd001674.36E-111661No hitNo description
PROSITE profilePS5129425.81762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2565116IPR009057Homeodomain-like
SMARTSM007171.3E-1766114IPR001005SANT/Myb domain
PfamPF002491.0E-1567112IPR001005SANT/Myb domain
CDDcd001676.91E-1371112No hitNo description
PfamPF066404.7E-68130360IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEILASYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADVKRGNI SKEEEDIIIK LHATLGNRWS LIASHLPGRT DNEIKNYWNS HLSRQIHTYR  120
RIYTARNDTA ITIDISKLHS AEKRRGGRTP GRSPSNNNNK KSGGKASKQQ QAQGPEPTSE  180
PAATKARDAS SSPAPVVTTT TSAASSPPQS DGARSAVVDP DRNQPNSVDD NGGNTCSEDA  240
TGPMMEELEP LDLGLWEAES EIEALLSTTT TGSSFSTTGL ELDAVGEAQV DDLLDMDWDS  300
FAAHLWGDPT QNQNQNDHSA GNHQQQNDDQ ATAEPHQQQQ AAGCSNPGEL ESFATWLLSD  360
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24121185110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283951e-165KJ728395.1 Zea mays clone pUT6679 MYB transcription factor (MYB3) mRNA, partial cds.
GenBankZMU570021e-165U57002.1 Zea mays P protein (P) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984641.11e-147PREDICTED: myb-related protein P-like
SwissprotP278981e-101MYBP_MAIZE; Myb-related protein P
TrEMBLK4AKW01e-147K4AKW0_SETIT; Uncharacterized protein
STRINGSi039538m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-72myb domain protein 12